Continued">Continued">Continued">Services – Children Cancer Hospital Egypt 57357
  • 19057
383171

Genomics and Epigenomics Research Program

Services

The Genomics and Epigenomics Lab offers a range of services from small procedures like DNA extraction up to sequencing entire genes or genomes. This means you can start and finish your entire experiments all from the comfort of our lab. Whatever you want to do, we can offer tailored packages to fit your needs. Our packages mostly include the use of bench space, consumables, equipment, plastic ware and reagents all brought to you at reduced market prices. This is a strictly non-profit organization and revenues are considered donations that are partly used to fund further research in our unit.


Service CodeServiceService Description
Nucleic Acid Extraction
GE001DNA ExtractionExtraction of DNA from a wide variety of sample types with the suitable extraction kit compatible with the required platform
GE002RNA ExtractionUsing the suitable kit to obtain the optimal concentration for the required platform
GE003Plasmid ExtractionUsing kits suitable for plasmid extraction to isolate high quality plasmid DNA suitable for using with high-throughput technologies
PCR (Polymerase Chain Reaction)
GE004PCR Amplification of Target GenePCR Amplification of Target Gene (using ProFlex PCR System by Applied BioSystems)
GE005Real-Time PCR Using Taqman AssayReal-Time PCR using TaqMan assay (Primers are designed for gene of interest)
GE006Real-Time PCR Using SYBR Green AssayReal-Time PCR using SYBR Green assay (Primers are designed for gene of interest)
Nucleic Acid Quality Assessments
GE007Gel ElectrophoresisAssessment of DNA quality and size using the basic method of gel electropohresis.
GE008DeNovix DNA Concentration AssessmentQuantification of DNA concentration in the samples using specific fluorometeric dye compatable with DeNovix QFX Fluorometer device for accurate concntration measurments.
GE009DeNovix RNA Concentration AssessmentQuantification of RNA concentration in the samples using specific fluorometeric dye compatable with DeNovix QFX Fluorometer device for accurate concntration measurments.
GE010Bioanalyzer DNA AssessmentAssessment of the size, integrity and purity of DNA with minimal sample volumes for accurate results using Agilent Bioanalyzer 2100 and exporting the data in many different formats for ease-of-use.
GE011Bioanalyzer RNA AssessmentAssessment of the size, integrity and purity of RNA with minimal sample volumes for accurate results using Agilent Bioanalyzer 2100 and exporting the data in many different formats for ease-of-use.
GE012LabChip GX Touch DNA AssessmentSizing the DNA using the automated capillary microfludics technology of the LabChip GX Touch that are reproducible, high resolution and optimal for NGS library preparations.
GE013LabChip GX Touch Small RNA AssessmentSizing the RNA using the automated capillary microfludics technology of the LabChip GX Touch that are reproducible, high resolution and optimal for NGS library preparations.
Next-Generation Sequencing
DNA Sequencing
GE015Plasmid SequencingSequencing of bacterial plasmids using Next-Generation Sequencing technology including extraction, quality assessment, library preparation and running on MiSeqDx Sequencer.
GE016Microbial Whole Genome SequencingSequencing of small-size genomes using Next-Generation Sequencing technology including extraction, quality assessment, library preparation and running on MiSeqDx Sequencer.
GE01716srRNA Microbiome Profiling16srRNA microbiome profiling using Next-Generation Sequencing including extraction, quality assessment, library preparation and running on MiSeqDx Sequencer.
RNA Sequencing
GE018miRNA ProfilingmiRNA profiling using Next-Generation Sequencing including extraction, quality assessment, library preparation and running on MiSeqDx Sequencer.
Clinical Sequencing
GE028Comprehensive Clinical Exome PanelComprehensive 4,800 Disease-related Genes Sequencing Panel on MiSeqDx
iScan Microarray
GE031Infinium Methylation EPIC Beadchip (850K SNP)Infinium MethylationEPIC BeadChip (850K SNP)
GE032OvineSNP 50The OvineSNP50 BeadChip array features over 54,241 evenly spaced probes that target SNPs, offering more than sufficient SNP density for genome-wide association studies and other applications such as genome-wide selection, determination of genetic merit, identification of quantitative trait loci, and comparative genetic studies.
GE033Infinium XTInfinium XT (Scale genotyping of up to 50,000 single/multi species custom variants)
Bioinformatics Analysis
GE034Bioinformatics AnalysisExtract knowledge and information from molecular generated data and perform necessary downstream analysis to decipher the biological question in regard to the main experiment.

  • Regarding the forms, kindly follow the following steps:
    • First Step: To request a quote for your technique of interest, kindly fill “Step 1: Quote Request Form”. Filling this form accurately with your needs helps us to give you the actual price of the service that we provide to you. You will receive the quote within 48 hours from the submission.

    • Second Step: When delivering your samples, kindly fill the “Step 2: Samples Submission Form”. This form will provide us with the data of your samples we received. So it has to be filled precisely. Samples will not be processed unless the samples submission form is successfully submitted.

    • Third Step: After receiving the results of your samples in the form you requested, please fill “Step 3: Customers Feedback Form”. Filling this form will help us improve the services we provide.

  • Polices and Guidelines

    • The genomics Unit will provide guidance with project design if necessary; however, the final experimental design is the customer’s responsibility. so Kindly read carefully.

    1. Required Documents

      2. At least one of the following quality control files should be provided prior to delivering the samples:

      1. Fluorometric quantification on the DeNovix QFX fluorometer for specifying concentration.
      2. Sample integrity/quality analysis using gel or automated electrophoresis on a Bioanalyzer.
      3. If the customer does not have access to proper quality control instrumentation, Genomics Unit can provide the services needed.

    2. Submitted Samples
      • Please remember that it is your responsibility to keep track of the identification of your samples. When filling out the sample data sheet (in section C), use a unique sample ID and description that matches your records.
      • All samples will be quantified on the DeNovix prior to acceptance for sequencing.
      • Only samples that meet technical requirements (quality, concentration and volume) will be accepted for further processing. The customer will be notified if any samples fail to meet the requirements.

    3. Data Output
      • The raw sequencing data will be de-multiplexed and provided to the customer as FASTQ files, BAM or VCF depending on the customer’s requirements.
      • The analysis results will be available only for ONE MONTH.

N.B.: Both that both the samples and data will be disposed of after one month from delivering the data.

N.B.: A disclaimer document for the samples' information and data providence has to be signed upon delivering the samples to our lab to initiate the processing of the samples.

N.B: It's the customer's responsibility to deliver his or her samples to the unit after the payment process; any delay in the sample delivery process will be the customer's responsibility.

For more details, please contact:

Genomics and Epigenomics Research Program Services [email protected]

Working days: Sunday to Thursday from 8:00 AM to 4:00 PM.

    CCHE 57357 Genomics and Epigenomics Research

    Program Quote Request Form

    Section A

    General Information

    Full Name*

    PrefixFirst NameMiddle NameLast Name
    Phone Number*
    Email*
    Institution*

    Section B

    Samples Information

    Aim of Project*
    Number of Samples*
    Organism*
    Mention the Species*
    Sample Type*
    Sample Source*
    Platform / Technique*
    Bioinformatics Analysis*

    Section C

    Contacts

    For more details please contact:

    • Genomics and Epigenomics Research Program Services
    • Working days: Sunday to Thursday from 8:00 AM to 4:00 PM

      CCHE 57357 Genomics and Epigenomics Research

      Program Samples Submission Form

      Section A

      General Information

      Full Name*

      PrefixFirst NameMiddle NameLast Name
      Phone Number*
      Email*
      Institution*
      Department*
      Quote Number

      Section B

      Samples Information

      Project Title*
      Aim of Project*
      Organism*

      If Other:

      Mention the Species*
      Sample Type*

      If Other:

      Sample Source*

      If Other:

      Number of Samples*
      Other Information*

      Section C

      Genomics Facility Service Information

      Select the platform that meet your study design

      qPCR Using QuantStudio 6 Flex Device:
      Microarray (Illumina iSCAN)
      Next Generation Sequencing (Illumina MiSeq DX)

      Section D

      Bioinformatics Analysis

      Data Output Method (Select one or more)*

      If Other:

      Bioinformatics Analysis*

      Section E

      Confirmation of Request

      Confirmation*

      Printed Signature*

      Section F

      Contacts

      For more details please contact:

      • Genomics and Epigenomics Research Program Services
      • Working days: Sunday to Thursday from 8:00 AM to 4:00 PM

        Genomics and Epigenomics Research Program (GERP) Customers Testimonials

        We're glad to hear from you

        Our Dear Customer,

        We’re so glad to communicate with you again. Due to the launching of our Genomics and Epigenomics Research Program (GERP) website, we are collecting feedbacks form our previous customers in order to report them in “Testimonials/Feedback” section in our website. Thus, we would like to know your feedback about your previous experience with us. We also need to know if you have any other comments you would like to inform us with. Constructive criticism helps us improve our service and build a better trust with customers.

        Your Information

        Tells a brief about you

        Full Name*

        PrefixFirst NameMiddle NameLast Name
        Phone Number*
        Email*
        Institution*
        Department*

        Your Feedback

        Tell us how was your experience with us

        Service You Had*
        Your Feedback*

        Under Constructions

        • What type of services do you provide?

          • We provide different types of services to fill the research market needs such as Microbial whole genome sequencing, miRNA Profiling, Microbiome Profiling, … etc. You can find them described in the section “Services”.


        • How do I get a technical consultation about my project?

          • You can get a free consultancy upon your request.


        • How do I know the service that best fits my research needs?

          • We can provide you a free consultancy upon your request to best fit your experimental design and your research needs.


        • How do I request a quote?

          • You can request a quote by filling the “Quote Request Form” in section “Forms”.


        • hat is the cost of the service you do?

          • Every platform and every technique has a different cost than another. We give you the details and cost in a quote after you submit a quote request.


        • How much does the Bioinformatics Analysis for my samples cost?/li>

          The Bioinformatics Analysis cost differs according to the type of analysis done and number of samples.


        • How should I prepare and send my samples?

          • The samples are delivered according to the “Samples Submission Guide”


        • When and Where can I deliver my samples?

          • The samples are delivered in the Genomics and Epigenomics Research Program lab from Sunday to Thursday from 08:00 AM to 04:00 PM


        • How will I get my results and data?

          • Your data will be sent to you be email in the form of:

          1. Attached report contains the methodology and details of your data and figures.
          2. The original high-resolution figures (and fastq files in case of NGS) will uploaded into a Google Drive with the link sent to you.


        • How long will my results be kept on Google Drive?

          • Your data will be kept for ONLY ONE MONTH then it will be erased from our side.


        • How can I request a specific bioinformatics analysis for my samples?

          • You can tell us the bioinformatics analysis needed for your work in the section “Bioinformatics Analysis” in the “Samples Submission Form”.


        • What happens if my samples do not meet your starting material requirements?

          • You will be asked to provide us with another sample.


        • How long do you hold samples?

          • The samples are held ONLY ONE MONTH after the services are done and data and results are delivered then they will be disposed of, unless you retain them after the lab work is done.