The Proteomics and Metabolomics Program

MGF Converter

The software is a graphical user interface converter that relies on AB SCIEX MS Data Converter to convert mass spectral data (*.WIFF) from any AB SCIEX instrument into MGF files.

MGF Program link or file: Download Here
User Guide link or file : Download Here

ProteoCompanion

The ProteoCompanion software combines multiple columns of tab delimited text files based on unique identifier in the second index of file.

ProteoCompanion Program link or file: Download Here
User Guide link or file: Download Here

ProteoSelector

The ProteoSelector software selects multiple columns of tab delimited text files based on unique identifier in the second index of file.

ProteoSelector Program link or file: Download Here
User Guide link or file: Download Here​

SWATH-Auto System Analyzer Tool (SASA Tool)

SWATH-Auto System Analyzer Tool, SASA Tool , a novel SWATH platform for metabolomics non-targeted data analysis with accurate mass spectral library for metabolite identification using SWATH acquisition mode.

SASA Tool Program link or file: Download Here
User Guide link or file: Download here​

UniprotR

Connect to Uniprot https://www.uniprot.org/ to retrieve information about proteins using their accession number such information could be name or taxonomy information.

CRAN Link: Click here
GitHub Link: Click here
Web Service link: Click here

Fraction Blender

Fraction Blender performs proteomics and metaproteomics downstream data analysis by combining multiple fractions into one file and reporting statistical summary of combination process.

Fraction Blender link or file: Download Here
User Guide link or file : Download Here

Uniprot Downloader

UniDownloader (UDr), is a tool to download correctly proteins sequences as fasta format from UniProt (https://www.UniProt.org). UDr uses query to hit accurately and download all the proteins sequences of a particular organism or a whole taxonomy level protein sequences.

UniDownloader link or file: Download Here
User Guide link or file : Download Here

Xconnector

Xconnector is a software package designed to easily retrieve, and visualize metabolomics data from different database sources.

Xconnector link or file: Download Here
User Guide link or file : Download Here

DiProt

The DiProt software is used for analysis of Label-based Proteomics data. It merges multiple files into a single file by performing several statistical operations to quantify labeled proteins.

DiProt Program link or file: Download Here
User Guide link or file : Download Here